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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3ZEX
A, B, C, D, E, F, G, H
1
RIBOSOME
Electron Microscopy
5.57
2012-12-08
model 1
>strand_A
cAGACCUGAGUGUGGCAGGACCACCCGCUAAACUUAAGCAUAUUACUCAGCGGAGGAAAAGAAAACAACCGUGAUUCUCUCAGUCAGCGGCGAGCGAAGAGGGAUUCAACUCGUUGCCGAAUCGGGUCUUAUAUGACCUCGAACUGUGGCACCAUUUUUGUGGCCGUUCUUAUAGGGCUGGUGCAGGCGUGGCGGAAUUCAAUUGCAAAGCAAACCCGUUGCUGAACACAUUUACAACCCUUCAUGUGAGUAUUGAGCCAAAGAAGGUGUCAGCCCAUUACAUUCCUUAGCCACGGAGCCUACGCGCCUCCUCAUGUUCGGUCCAAGAGAGUAGCACUGUUUGGGAAUGCAGUGUCAAGCCGGCAGGUAUUUGUCUGCCAAGGUUAAAUAUAGAGUAGGAAGACCGAUAGCGAACAAGUAGCGUGAGCGAAAGUUUGAAAAGUACUUUGGAAAGAGAGUGACAUAGAACCUGAAAUCGUGACAACGACAAUGGAAGUACCUUCAUUUCUUUUUUUUACGGCCAGACCCAACCUCGCCGCGCAAUUUGGUUCAACAUCCUUCACUGUGCGGGUUUCUCUUUUGAGGUCAUGGGGUGCGUGAGUGGGCGGAAUAAAGGGUCGGUGUGUUGUGUGUGGGUUUUUUCUCUCACUCUCUUCCUCCUUCCCUGUUCGUGCGUCUCGACGCUGGCGAUGGAAAUGGGGUGCCCCCACCCGUCUUGAAACACGGACCAAGGAGUCAAACAGACGCGCAAGGGAGGAGUAUGUAUGUGAGAACUCUUUUCUCGUACUGAAAGGGAGAGUGUGAUUUUACACCCGUGGCGUGCGCAAUUUCUCUUUUUUGUGUUUUUGCCCAACGCCGGCCGGCCCCCCGUGGGCUGCGCGCGAGUGUGCCUGUUUGGACCCGAAAGGUGGUGAACUAUGCCUGAACAAGGUGAAGCCCGGGGAAACCCCGGUGGAGGCCUGUAGCGAUGCUGACGUGCAAAUCGCUCGUACGAUUUGGGUAUCGGAGCGAAAGACUCAUCGAACCACCUAGUAGCUGGUUCACGUCGAAGUUUCCCUCAGGAUAGCUGGUGCUUGUCUUUAAGAAGUAUUGUGCGGUAAAGCAAAUGAUUAGAGGCAUUGGUGUUCUUGUAAUAUCGACCUAUUCUCAAACUUUAAAUGUGCAAACAACCCAGCCUUAGUUAUUUUAACAAGGCUUUUGGGUACAUAAGAAUUGAGGCACCAAGUGGGCCUUCUUCGGUAAGCGGAGCAGGCGAUGCGGAAUGAACCGCUUAGGGAUAUGUGGCGUCAAAACUUGUGGGCUCAUUCUCGAUACGUGAAAAGGGUGUUGGUGGAUAGGGACAGUUGGACGGUGGCCAUGGAAGUCGGCAUCCGCUAAGGAGUGUGUAACAACUCACCAACCGAAUCCACCGGCCCCGAAAAUGGAUGACGCUUAAGCCCCAUGUGCGUGAUUGCCCAUUAUUCCUUUGGUGAGGGCGGCUAUAUUUCUUUGUGAGAAAGUGUAGCCCUCCCGAUGUAGACGUGGCGUGGGGGUGAGGACGAAGCCGAUGGCGCGAGCCUCGGAUGGACCCGCCUCUAGUGCAGAUCUUGGUUGGCGUAGCAAAGAUCUAACGGAAUAUUUUUUCUUAAAUGCAACGUUGGAUACUGGAGCGGGGAAGGAUUUCGUGCCAACGGCACUCGUACACGAGUUGUUCGGUCACUGAGCACAACGUUACACCGUUUUGUUAGGAAAGUGAAGGUGGUCGGCGCACAUCUCCCUUUUUUGGGGUUUGUGUGUUUUACCGGCUUAUCUGAAAAGGGGCAACAGAGAACCUGGGAUGAUAUUCCAAAAAGAAAUUGCAUGUGGG
.....(((((.....((.(....(.(((.....................)))..).........(......)...((((........(.....)......))))....(.(...........((((((......))))).).........................((..(..((((..((((((((.(((((......(.(.((...(((((.....))))).....(((............)))....)).)).(((...)..[......)).].............)))))....)))..)))))))))...)...))............(((((((........))))))).......((((..[[[[[[))))...).).............(.(...((...............((....)).....(.......(..((((....))))............).......(((.....((.....((..(((((.((.(((....(..((.....((..(.(((.......(((((.(.................).)))))..........).)).)....))..............(..((...(.(....((.(......(((.(((......))).)))......)..))...).).)).......)........)).)....))).)))))))..))...(((........))).((((((........(.(.(((((..(((...((................))...)))...((....))....(((((....)))))...(.((..((((((..........))))))....).).)..((((((.............)))).))....))))).).)......((.(...((((((.....(((((((((..((((...(((.(((....))).)))...)[)))...(((..((.((........)))).)))....))))))))).(.((.......))...)..))))))......).))..((((.(......((......))..(..(((((((........((....(((((((...(((....((...(.(((......((((.....))))....))).)...))..)).)...)))))))...((((((...(.((.......)))...))...)))).........)).)))))))...)..((((.((.((.....)).)).))))....(((......)))...(((((((...((.[[[...(.(...((((........(...........(.(.((((((((((.....{.(.(((.(((...((.........))...))).....(..............).))).)...))))))))))).)..........]]].)....)))).))...........))...)))))))((((.((.((......(((((..........)))))...)).))))))....).))).)(((((((((.........(((...(((....)))..)).)......))))))).)).....))))))((......(.....((((((......((........))......)))))).(((.....((((..((....(((.....((.....))...))).....(([.....(...((...((........))...........((..(((.((((.((((((((..((((......))))..)))))).)).)))).)))..))........))....).......((.........)).......))((((..((...
>strand_B
uCCCAACUGCAGACCGUACUCAUCACCGCAUCAGGUCCCCAAGCAUCGAAUGCUCUGGUAACAUAGAGAAAGGUACACUCAGGGAAGUCGGCAAAAUAGAUGCGUAAGUUCGCAAGAAGCAUUGGCUCUGAGGGCAAAGUGGGGGUCCACAGGAGGGCCAGUGUCCUUUGAAGGCUACCCUCCCGAGCCGUAUCUACUAACCUCCUUCUGGUGUGUUGUUUUUACGUCUCACUCCCGCGCAGGUGUUUUCGCUUCCUUUUUUUGGUUGCGCACCUACAAAUUGCCAACUCAGAACUGCUUACGGCGGGGAAUCCAACUGUAUAAUUAAAACAUAGGUUUGUGAUGCAUCCAAGUGGUGUAUGUCGCAAACUGAUUUCUGCCCAGUGCUCUGAAUGUCAACGUGAGAGAUUCACCGACGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCUUCCAAUUAGAGACGCGCAUGAAUGGAUUAAUGAGAUUCCCUCUGUCCCGAGUUACUAUCUAGCGAAACGACAGUCAAGGGAACGGACUUGAAGGGCUAAGCGGGGAAAGAAGACCCUGUUGAGUUUGACUCCAGUCUGGCUCUGUGCGGCGACUUUGGAGGUGUAGUAUAGGUGGAAGCGCAAGCUCAAAUGAAAUACCACCACUCGGAACGUUGCUUCACUUAUCGAAUGAAGAGACCAAUGGUUGUUUUGCGCAGUCUUCGGGCUGUGCGCCGUCUAGGCUGGGCAUAAUUGUGGUGUUUCUUUCACCGCCACGGGAGGGGUGUUGGUUUUUUAUCCUCCUCUCCGUUUCUCCUUUUCUCUCUUUCUCCCUUUUUUUGGGCGUUUGAGGGUUGGUGACCCGUGGGCGCCCACGCGUGCGGAACUACUGCGCCAACGGGGUGGGAACUUUUCGUUUCUUCUCCGGAGUCUUGUUUCGAGACAUCUGCCAGAUGGGGAGUUUGGCUGGGGCGGCAUAUCUGUUACACGACAACGCAGGUGUCCUAAGGCGAGCUCAGUGGGAACAGAAAUCUCACGUGGAACACAAGCGUAAAUGCUUGCUUGAUUAACGAUUUCCAGUACGAAUCGAGACUGCGAAAGCAAGGCCAGCGAUCCUUUGCGAAGAACAGGAAAUAUGAACAAAUCAUACCAGAGGUGUCAGAAUAAUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAACCUAGCGCCGCAGAAGACGCUAAGGGUUGGAUUGUUCACCCACUGACAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUGGUUUUACCCUACUUGGCUGGAGAUUGCGAGUAAAAGAUUAUCCGCGCAAAGCGGAGGCAGUCCGUUUUUUUCUGGGUCUGCCGUUCGGUGGCAUGUGCUUGGCGCUGCCAUCUC
.....)).))))...]..)).....((......)).)))).((((.....))))..)))....((((....((((..(((.((..(....(.......(((((....(....).....)))))((.((((..(((...((((((........((((....(((.((((..)))).)))))))..(((.((((...(.((.................)).)..)))).)))..))))))...((((....(((..((.......))..)))))).).......)))....)))).))(.).......((((((((..].((.........))...(..((((....((((.....))))......))))..)...(((.(((...((.((.....((....(((.......)))....))..)).)..).)))(((((.........)))))........((..........(((((.......)))))..)..)....))).....).))))))).)..))).))).)))).))))).....)).[..(((((......].)))))....(((((..(((.(........(((..((((...(((((.(((((((....(..(((.((.(..((........[...((((..((....))..........].))))...))..)..)).)))..).....((((.....((......(...((...((((((((....))))))))...).))..((.((((........((((.......))))..((((((..((......((.....))..)).((.((...((((.....(.(((...............))).)...))))...)).))))))))...))))....))...................((((.((((((.....)))))).)))).....))...))))........)))))))..)))))..(((.......)).)((((((...........))))))([.(...(((((((.(.((((((.......))))))...).((][..[[))....)))))))....(....((((....{..))))...)..((......)).)]]..]......((((...............(((.]]]]]])))..)))).....)}.....)))..).)))........(..(.(.((((((...((.......))...))))))...))...).......((......((((...((((((.(......).))))..))..(((.(.....).))).....))))...........))....(((((((....))).)))).....)..))).)))))........................(((((.....)))))(((((((((........)))).)))))....((((((..((((...)))).))))))..
>strand_C
aACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
..))....))).......)...))..).).....)......((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).))))).))........))))).....
>strand_D
gGGUACGACCAUACUUGGCCGAAUGCACCAUAUCCCGUCCGAUUUGUGAAGUUAAGCGGCCACAGGCCUCGUUAGUACGGCGAUCAGUGAUGGCGCUGGAACCCGGGGUGUUGUACUCU
((((((..(....((((((((.....((.(((...(....)...)))...))....)))))).))((((((......((....(((....)))...)).....)))))))..)))))).
>strand_E
uGGAAAUGCGAAACACUUGCCAGGUGACCCAUCCAUCCUCCCACGGUGAGCUUUCUUUUCACCAUAAUCCACAUCUCCGGCCUUGCUGGGGCUUGGGCCUCUCGACUUCUCGCGUUACUCGGAGCGGGGGCUCAAGAUUGAAAAAUGCAGCUCACCCUACGUACUGUCCUUUGUUGUGAGUUCGGCGCAUUAAAGCAAAAACCUGGGGUG
((....))........((....(.(...((...(((........((((((.......)))))....((...((.............))(..((((..........(.......)..........))))...)....)).......((..((.........))..)).).......))).....)).........))..))..........
>strand_F
cGAAUCGCCACUUCUCUUAUCUGGGUGCUCUGCCCGCCCUUGUCGGCGCCCAGUACCUUCAUUUUCACAAGAU
..................................((((......)))).........................
>strand_G
gUGAGAUUGUGAAGGGAUCUCGCAGGCAUCGUGAGGGAAGUAUGGGGUAGUACGAGAGGAACUCCCAUGCCGUGCCUCUGGUUUCUGGAGUUUGUCGAAGGGCAAGUGCUCCGACGCUAUCGCACGGUGGUUCUCGGCUGAACGCCUCUAAGCCAGAAACCAGUCCCAAGACCGGGUGCCCG
...(((((.(...).)))))....((((((....(((..(..((((......(....).....))))..)((.((...((((....((((((((((....)))))..)))))...))))..)).)).((((....(.(.....}.......).)....))))..))).......))))))..
>strand_H
uUUUGUCCCUCUCCAAACGAGAGUACAUGCAUGGGCUGGCAUGAGCGGCACGCUCCACGACCGUGGGGCUCGAGGGGCACUUUACGUCCCGAGGCGCUGAACCUUGAUGCUUGGAAUUUCAUGCUCAGGGACUUU
.....(....(.......)......(.....(..(...(......(((...(((((((....))))))).......(...................)......))).....)......)...)....).).....
