RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
3PYS	NA0931	A, V	1	RIBOSOME	X-Ray Difraction	3.4	2010-12-13

model 1

>strand_A
uGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGAGGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUC
....((((..[.[[[..)))).(((..(((((..(((((((((....(((.(((..(((..((.(((.(((...........))).))).)))))......(((......((((((((..((....((((((..((((....((((((....)))))).....)))).....((((...(((....)))...))))...((((...)))).))))))...))))))))))(((....(((..((((((((.......)))))))))))......)))..((((((((....))))...))))))).(.(((............))).).((((....))))...)))))).).......((....(((........)).).))..)).))))))..(((.......(((......)))......)))....(((((...(.....(.(.....).)......)....)))))......(.((([[[...(((((.....((.]]])).......)))))))).)..))))).)))..........((([[...(.((((...(((.(((((((...((((((((......((((((.....))))))....))))))))....)))))))..(.(((((((...((((((((.....(.(((....((........)).......))).).....).......((....)).)))))))..))))).))...))))...))))....(((((....((...((((.........))))...)).)))))......{...((((((..((((((((((...))))))))))...((..]])).....)))))))))).(((......((((....))))....)))...]]].](.(((.(((((((..(...((((....(((((.((......((........))..........(..((((..(.....(.((((...((............)).....(((....)))...)))).)..).((.(((....((.((.(....(((((.(.(....).)..((((......))))...))))).....(.((...((.(....(.....(.....)..)......).))....(..(.((......)).).....)..)).).....).).).)...)..)))).)...))))..)...))..)))))........((.(((.....(.(......(((......)))........).).....))).)).......(....(..((.(........).))..)....).....)))).......((((((..........)))))).......)....))))))))))..)..(.(..((.(.(.((..((..(((((((((((((...(.((((....(((....))).)))).)..)))))))))))))..))..)).)..).))...)..)..(((((((((....)))))))))}....

>strand_V
gGUUAUUCAGAUUAGGUAGUCGAAUGACCUAAGAAAUUUACCU
[.[..[[..[.[.((((.].].]]..].]---------.))))