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Structural elements
Secondary structures
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Institute of Computing Science
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3JYX
3, 4, 5
1
RIBOSOME
Electron Microscopy
8.9
2009-09-22
model 1
>strand_3
gGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGUAGAGCCGACAGUAGUGUAGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
(((((((......((..........(.........(....).........)..........)).(.........(..(..(...)..)..).........)....))))))).
>strand_4
aAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
....(((((.........(......(..((((.((.......(.(((........))).......(..........................)......)................(((((((....)))))))....(..((((..(........(
>strand_5
gUUUGACCUCAAACAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCCUUGUCUAUGUCCUUGGAACAGGACGUCAUAGGGGGUGAGAAUCCCGUGUGCGAGGAGUGCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGGGUGGAAAUUCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGGGAAGGGCAUUUGAUCACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAACCCAUAGGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGUGAAAUGACGUAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGAGUCUAACGUCUAUGCGAGUGUUUGGGUAAACCAUACGCGUAAUGAAAGUGAGCGUAGGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGAGUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUUGACGUGCAAAUCGAUCGUCGAAUUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCAGGAUAGCACGAAGCUCGUUUUAUGAGGUAAGCAAUGAUUAGAGGUCGGGGUCGAAAGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUUGAACGUGGACAUUUGAAUGAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAACAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCCAAGCGUGUUACCUAUACUCUACCGUCAGGGUGCCCUGACGAGUAGGCAGGCGUGGAGGUCGUGACGAAGCCUGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGGGGGAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAUCGAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGUGGUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGCGAGCCCUGGGAGGAGUUAUCUUUUCUUCUUAACAGCUUAUCACCCGAAUUGGUUUAUCCGGAAUGGGGUCUUAUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGACGGCCGUGAAAAUCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAGAAUAAUGUGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUAAUUUUCCACAUCCUUGUGUAUAGGGUCCCAUUCGGGGCUGAUCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCCAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUUUUGAUUUUCGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGCCUCGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUACCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACAUCCGCUGGAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUGUACCUUUUGUAUAAUGGCGUCCUUGUGGCGUCUACCUUUUGUAUAAUGCUAGCAACGGUGCACUUGGCGGAAAGGCCUUGGGUGCUUGCUGGCGUGAAAUUGAACUAUUUUGCGUGGGGAAAAUCAUUUGUAUACGACUUAGAUGUACAAGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUACCUUUUGUCUGAUUUGU
).......)..))))..)..))...((((((...................))))).).........((....))...((((......((.....)).....))))...((((.........(...((..(.....)..))....).............((.........(...((.(((((.(....((((........))))[[(...).(((.....]])))....).)))))...))...)............)).....)....((((..............)))).....(((..........)))..))).........))))..)..................((....))............(..((.(....).))............)).........)))))......((((....((.......((.........(..(((((.....))))).)..............)).............(((..(.((...((..........((((.......(((((....)))))........))))........))....)).)..))).........(((....)))..................))....))))...(((........)))..(((.............((......(.(...((.....))...).)..................(.......((((....))))........)...(..(((.(..(....)...))))...)...........)).........((.(...((((((.....(((((((((.....(....(((..........)))....).......(....((((........))))...)....)))))))))....(.......).......))))))......).))..((((......(.(.(....).).)((..(.(........(((......((.....(........((.((((....)))).))........)....))........))).....((..(.(...........).)..))...............))...))..((((.((((.......)))).))))....(((......)))...(((((.....(((......(..((((.(..........(....(((.(((.(.....[........(.....................)..........((......))...........).))).)))...)..................))))).)))).....)))))((.(..........).))......))))(..((....(((......((((((........))))))...)))....))...).......)))........((.....((((((.......))))))..((....(..(..(...((((..(....(.....)..)..)))....[.((..(.(.....(((..(....).)))......((((((........)))))).........))...(((............))).]((....(................................(((........(...((((.........))))..(.....................(.....).........................)...((.((....)).)).....)...........)))(..)........................)......))..)).).)................)..).(..(.....)..)..)).......(.......((((.((..(............(.(((....(.[..).....))).).(.(((.....))).).(...).......(((((.(.....((.........))...((..((......(((....)))........))..)).]...(..((..((((....................................))..)))).(((((.........)))))........(.................................)....).........).)))))....))).)))).....)...))..........(((((........)))))....(((....(((.((.......(((.((...(..(...(.((((((((......((((((...(.................(......................)........)...)))))).......(((((.....((((..(((((......)))))..................(((....))).....))))..))))).....))))))))..)...)...((.......))..(((...............))).(......(((((((.(.((..(.........)..))...).......[.......)))))))....((...((........))...))................]...........((................)).......).....).....))))).........(.(...(..((....((.......))....))..)....).)..........((.(...(.((..(.(((((((......))))))..).).(((.........))).....)).).......).).)......((((((....))).))).....))..)))...)))........(........(...(((........(....).......)))...(.......(.....((..(.(.((......)).)...)..))....).....).........((.......].........))........)..........)........................................................................((((((((..(.((....................)).))))))))).................................(..(.......)..)......(..(((.................(((((......)))))................)))..)..........
