RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
1XBP	RR0084	0, 9	1	RIBOSOME	X-Ray Difraction	3.5	2004-08-31

model 1

>strand_0
gGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCUGGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGACGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGGGGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAACUCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAAGAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAUCAGCCCAAACCGAAACGCUUGCGUUUCGGGGUUGUAGGACCAGUUUUUAAGAUUCAACCCCUCAAGCCGAAGUGGCUGGAAAGCUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGCGGUUGACUGUACUGGCACCUGAGUAGGUCGUUGUUCGUGAAACGAUGACUGAAUCCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGACCGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUACAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUAUUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCUUAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAUAGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGUGAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGGCGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUGAGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAUAGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGAUGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAGGGGGCCUACCAGCUUACCAAACCUUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUGAGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAACCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUGGUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAGUGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUUGUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACCGGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCAUGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAAGGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAAGUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGACAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUGGAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAUGCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCUACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUAAACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAGGUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCCUCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAAGAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGGCCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAACACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUCAAGUGGAGCGGUGCAAGCUGCGAAAUGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAGGCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUGAAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAGGACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUUGGGAUUCGGGUUUCUCUGCGUAGGAUAGGUGGGAGCCUGCGAAACUGGCCUUUUGGGGUCGGUGGAGGCAACGGUGAAAUACCACCCUGAGAAACUUGGAUUUCUAACCUGAAAAAUCACUUUCGGGGACCGUGCUUGGCGGGUAGUUUGACUGGGGCGGUCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAGGUCACCUCAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAAGGUAGAAGGUGGCUUGACUGCGAGACUGACACGUCGAGCAGGGAGGAAACUCGGGCUUAGUGAACCGGUGGUACCGUGUGGAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGCUCCUAGUACGAGAGGACCGGAGUGAACGGACCGCUGGUCUCCCUGCUGUCGUACCAACGGCACAUGCAGGGUAGCUAUGUCCGGAACGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCAGCCCCAAGAUGAGUUCUCCCACUGUUUAUCAGGUAAGACUCCCGGAAGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUAGCAAUGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCUUGACCACUC
.(((((((......(.((((((((.....(((...(((((((((((......((((...[...[[...).....(((((.....(.]]...]..)........)))))...)))....(((....)))(((.(....).))).(.(....).).))...((((((.........[.........))))).).........(......)...(.(.......((.]...))......).)...(((...-------------------------------------------...(((((..((..(((....((((......))))..[(...).(((.....].)))...)))....))..)))))......-------------.(((((((...........)))))))......(((.(..[[[[).)))..)))......)).)))))).)...............((....))....)).........((((....)))).............).....)))))))).).......(.(((((.((.......)).))))).)...(.(........).).((((((....(((.((.(((((....(.....((......)).....)...((....))...(.........)..........))))).)))))...(.(...(((((......(((((((((..((((.....((((......)))).....).)))...((...(.((........)).)..))....)))))))))...((.......)).......)))))......).)....((.(.......(.(....).).....(((((...(.(((.(((......(((...(((...((...-------------------...))...)))..)).)......))).).))...))))))........(((((..(......)..)))))......(((......)))....(((.(((...((((((...[.[.[........[.....((..((((((((.(.......(.(((.(((..(.(.........).)..)))..........(......)....)))..)..).)))))))).))..........))).].......].]])))...))))))......((..(.....)..))..........).))...((..(((..(......(((...((....))...)))...)..)))..))........)))))).......(......(..(.(.......).)..).(((....((....(.....(((.(...((.....)).).))).....[[.(((..(...(.(...(((....)))...).)...)....(((.(........).)))]](.(((((((...((.....(.....((..(..((..((((....((..............))...(..(((.(....(..((((((.............)))))).....).....)))).)......((((....))))......))))...))...)..))..........).....))......))))))).))))....).....((......))...)).(((((....)))))..)))...((((....(.((((((.(........(...........(....(.[..).....)....((((((((...))))))))(...).......(((.((.((...(...........)...((((.((.....(((.....))).......)).)))).]((((.(((..((.(((...(......(...(((........)))...)......).)))...)))))(.((((.......)))).)........((..........(((((.......)))))..)..)....))))...))..)).))).)....).)))))).).)))).)...........(((((........)))))..(((.((((.(((..(.......((..((..((..(((....((.(((...(((((.(.....(.((......-----(((((...------....((.((------)).))....----------------)))))..)).).....).)))))...((((((........))))))......))).)).....)))..(.(......[).)(((((...........].))))).[((...(..((((.(.((((((.......))))))...)..(][..[[).....))))..)...((..........{.........)).(((....))).))].].].....((((.(..((..]]]]..)).).))))......}......))....)).)).......(.(...(.((((.(....(.......)....).))))...)..)...).......(((..(.(((...((((((.(.......)))))..))...(((.......)))......))).)......))).........(((.(....).).))......)...))))))).)))[...(.(..((...(((...(....((.....(....)....))....).(..((.....((...((((.((.(((....))).))....))))...))...))..)....((....(((...............)))....))...)))..]....))..).)..(((.---.)))....(((.((((.........)))).......(((((.((.......(.(....).)......))..)))))........)))....)))))))..---

>strand_9
ACAcCCCCGUGCCCAUAGCACUGUGGAACCACCCCACCCCAUGCCGAACUGGGUCGUGAAACACAGCAGCGCCAAUGAUACUCGGACCGCAGGGUCCCGGAAAAGUCGGUCAGCGCGGGGGUUU
---.(.(((.((.....((.((.((.....(((((...............)))..))....)).))..)).((.......((.(((((....))))).)).......))...)).))).).---