RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
1X8W	UR0041	A, B, C, D	1	RNA	X-Ray Difraction	3.8	2004-08-18

model 1

>strand_A
gACCGUCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCGCGCAGCCAAGUCCUAAGUCAACAGGAGACUGUUGAUAUGGAUGCAGUACACAGACUAGAUGUCGGCCGGGGAAGAUGUAUUCUUCUCAUAAGGUAUAGUCGGACCUCUCCCGAAAGGGAGUUGGAGUACUCG
[.[[[.[....((((((...((((((.....(((.((((.(((..((((((((......))))))))..((.......))....)))......)))))))....))))))..)).))))((...((((...((((((((....))))))))..))))...)).....(((((...].]]].].((((((.-----.))))))........))))).(.((.(((((....)))))..))......).

>strand_B
gACCGUCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCGCGCAGCCAAGUCCUAAGUCAACAGGAGACUGUUGAUAUGGAUGCAGUACACAGACUAGAUGUCGGCCGGGGAAGAUGUAUUCUUCUCAUAAGGUAUAGUCGGACCUCUCCCGAAAGGGAGUUGGAGUACUCG
[.[.[.[....((((((...(.((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....)))).)..)).))))((...((.(...((((((((....))))))))..).))...))...(.(((((...].].].].((((((.......))))))........))))))(.((.(((((....)))))..))......).

>strand_C
gACCGUCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCGCGCAGCCAAGUCCUAAGUCAACAGGAGACUGUUGAUAUGGAUGCAGUACACAGACUAGAUGUCGGCCGGGGAAGAUGUAUUCUUCUCAUAAGGUAUAGUCGGACCUCUCCCGAAAGGGAGUUGGAGUACUCG
[.[.[......((((((....(((((.....(((.((((.(((...((((((((....))))))))...((.......))....)))......)))))))....)))))...)).))))((...((.(..(((((((((....)))))))).)).))...))...(.(((((.....].].].((((((.-----.))))))........))))))((((.(((((....)))))..))-----)).

>strand_D
gACCGUCAAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCGCGCAGCCAAGUCCUAAGUCAACAGGAGACUGUUGAUAUGGAUGCAGUACACAGACUAGAUGUCGGCCGGGGAAGAUGUAUUCUUCUCAUAAGGUAUAGUCGGACCUCUCCCGAAAGGGAGUUGGAGUACUCG
[.[[[.[....(.((((...(.((((.....(((.((((.(((..(((((((((....)))))))))..((.......))....)))......)))))))....)))).)..)).)).)((...((((...((((((((....))))))))..))))...))...(.(((((...].]]].].((((((.-----.))))))........))))))(.((.(((((....)))))..))......).