RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
1PNY	RR0075	0, 9	1	RIBOSOME	X-Ray Difraction	9.5	2003-06-13

model 1

>strand_0
gGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCUGGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGACGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGGGGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAACUCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAAGAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAUCAGCCCAAACCGAAACGCUUGCGUUUCGGGGUUGUAGGACCAGUUUUUAAGAUUCAACCCCUCAAGCCGAAGUGGCUGGAAAGCUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGCGGUUGACUGUACUGGCACCUGAGUAGGUCGUUGUUCGUGAAACGAUGACUGAAUCCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGACCGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUACAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUAUUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCUUAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAUAGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGUGAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGGCGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUGAGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAUAGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGAUGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAAGGGCACGUAAUGUGUUCUAAACCUUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUGAGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAACCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUGGUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAGUGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUUGUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACCGGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCAUGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAAGGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAAGUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGACAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUGGAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAUGCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCUACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUAAACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAGGUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCCUCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAAGAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGGCCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAACACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUCAAGUGGAGCGGUUUACUCAAGUGCAAGCAAAGCUGCGAAAUGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAGGCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUGAAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAGGACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUUCAACGUUGGGACGUGGUGCGUAGGAUAGGUGGGAGGCGAAGAACCCUGGCUACGGCUGGGGGGAGCCGCCGGUGAAAUACCACCCUCUACUCUUUGACGUUGUAACCUGAAAAAUCACUUUCGGGGACCGUGCUUGGCGGGUAGUUUGACUGGGGCGGUCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAGGUCACCUCAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAAGGUAGAAGGUGGCUUGACUGCGAGACUGACACGUCGAGCAGGGAGGAAACUCGGGCUUAGUGAACCGGUGGUACCGUGUGGAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGCUCCUAGUACGAGAGGACCGGAGUGAACGGACCGCUGGUCUCCCUGCUGUCGUACCAACGGCACAUGCAGGGUAGCUAUGUCCGGAACGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCAGCCCCAAGAUGAGUUCUCCCACUGUUCAGGUAAGACUCCCGGAAGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUAGCAAUGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCUUGACCA
((((((((........((((((((.....(((..((((((((((((......(((((..[[..[[..)).....(((.((...((.]]..]]..))......)).)))...)))....(((....)))(((((....)))))((((....))))))...((((((.....((....))......))))).).........((....))...(.((......((.....)).....)).)...((....-------------------------------------------..((((((...(..(((....((((......)))).[[(...).(((.....]])))...)))....)...)))))).....-------------.((((.((((.......)))).))))......(((((..[[[[)))))...))......)).)))))).))..............((....))....)).........((((....)))).............).....)))))))).........(.((((.(((.......))).)))).)...(.(........).).((((((....(((.((((((((.(..((....(((....)))....))...((....))...((.......))........).)))))))))))..((.(...((((((...(.(((((((((..(((.....(((((......)))))......)))...((...(.((........)).)..))....))))))))).).((.......))......))))))......).))..((((((.....(..(....)..)..((((((((..(.(((.((.((....(.(...(((.((((....((((((.....))))))....)))).)))..)..)....)).)).).))..)))))))).)...(((((((..(......)..)))))))....(((......)))...((((.(((...((([[....(.((((((...........((..(.((((((.........(..((.(((..(((.........)))..))).........((......))...))...)....)))))).).))...........]]......))))))))))...)))))))....(((((((...)))))))........))))))(.(((.(.(.(........(((..((....))..))).....).).).)))..).....))))))(......((.....((((((.......)))))).(((....((((..((...((((((...((.....)).))))))....[[(.((.((...((....(((....)))....))...))....((((........)))).]](.(((((((...((.....((....(((((.(((..(((((..(((.((...{{....)))))...(((((.(.(..(...(((((.............)))))......).)...)))))).....(((((....)))))....)))))...)))..))))).........)).....))......))))))).))).)..)).....((......)).)))).((((......))))..)))...((((....(((((((..((.......(........((((....(....).....)))).((((((((...))))))))(...).......((((((.((...(...........)...(((((((.....(((.....))).......)))))))..((((.(((..((.((((..((.....(...((((.------..((....))....))))...).....))))))...)))))(.(((.........))).)........(............((((.......))))......)....))))...))..)))))).)...))..))))))).)))))).....).....((((..........))))..((((((((..(..........((((.((((((..(((((.(.(.((((..((((((((((..((((.(......[..(((((..(((......(((((((....)))))))...)))..........].)))))).))))..))))))))))...(((((((......))))))).....)))).).)..)))))..(((.......)))((((((...........)))))).[((....((((((...(((((.........))))).....((][.[[[))....))))))....((((..(((...{..)))..)))).(((....))).))]]].].....((((.(..((..]]]]..)).).))))......}......))))..))))))......((((..(.((((((....(.......)....))))))...).)).).)......((((.((((((..((((((.(........).)))..))).(((((.....))))).....)))))..)...))).).....(((((.(....).).)))).........).))))))))[....((((((...((((..(((((((...............))))))).(((((...(.((...(((((((((((.}}.))))))...)))))...)).).)))))....((.(..((.(.............).))...)))..))))..]....))))))....((..)).....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))....)))))))).

>strand_9
CCCCCGUGCCCAUAGCACUGUGGAACCACCCCACCCCAUGCCGAACUGGGUCGUGAAACACAGCAGCGCCAAUGAUACUCGGACCGCAGGGUCCCGGAAAAGUCGGUCAGCGCGGGGG
(((((((((.....((.(((((.....(((((...............)))..))....)))))..)).((.......((.(((((....))))).)).......))...)))))))))