RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
1PNU	RR0073	0, 9	1	RIBOSOME	X-Ray Difraction	8.7	2003-06-13

model 1

>strand_0
gGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCUGGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGACGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGGGGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAACUCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAAGAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAUCAGCCCAAACCGAAACGCUUGCGUUUCGGGGUUGUAGGACCAGUUUUUAAGAUUCAACCCCUCAAGCCGAAGUGGCUGGAAAGCUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGCGGUUGACUGUACUGGCACCUGAGUAGGUCGUUGUUCGUGAAACGAUGACUGAAUCCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGACCGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUACAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUAUUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCUUAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAUAGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGUGAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGGCGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUGAGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAUAGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGAUGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAAGGGCACGUAAUGUGUUCUAAACCUUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUGAGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAACCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUGGUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAGUGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUUGUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACCGGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCAUGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAAGGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAAGUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGACAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUGGAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAUGCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCUACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUAAACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAGGUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCCUCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAAGAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGGCCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAACACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUCAAGUGGAGCGGUUUACUCAAGUGCAAGCAAAGCUGCGAAAUGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAGGCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUGAAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAGGACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUUCAACGUUGGGACGUGGUGCGUAGGAUAGGUGGGAGGCGAAGAACCCUGGCUACGGCUGGGGGGAGCCGCCGGUGAAAUACCACCCUCUACUCUUUGACGUUGUAACCUGAAAAAUCACUUUCGGGGACCGUGCUUGGCGGGUAGUUUGACUGGGGCGGUCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAGGUCACCUCAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAAGGUAGAAGGUGGCUUGACUGCGAGACUGACACGUCGAGCAGGGAGGAAACUCGGGCUUAGUGAACCGGUGGUACCGUGUGGAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGCUCCUAGUACGAGAGGACCGGAGUGAACGGACCGCUGGUCUCCCUGCUGUCGUACCAACGGCACAUGCAGGGUAGCUAUGUCCGGAACGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCAGCCCCAAGAUGAGUUCUCCCACUGUUCAGGUAAGACUCCCGGAAGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUAGCAAUGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCUUGACCA
((((((((........((((((((.....(((..((((((((((((......(((((..[[..[[..)).....(((.((...((.]]..]]..))......)).)))...)))....(((....)))(((((....)))))((((....))))))...((((((.....((....))......))))).).........((....))...(.((......((.....)).....)).)...((....-------------------------------------------..((((((...(..(((....((((......)))).[[(...).(((.....]])))...)))....)...)))))).....-------------.((((.((((.......)))).))))......(((((..[[[[)))))...))......)).)))))).))..............((....))....)).........((((....)))).............).....)))))))).........(.((((.(((.......))).)))).)...(.(........).).((((((....(((.((((((((.(..((....(((....)))....))...((....))...((.......))........).)))))))))))..((.(...((((((...(.(((((((((..(((.....(((((......)))))......)))...((...(.((........)).)..))....))))))))).).((.......))......))))))......).))..((((((.....(..(....)..)..((((((((..(.(((.((.((....(.(...(((.((((...(((((((.....)))))))...)))).)))..)..)....)).)).).))..)))))))).)...(((((((..(......)..)))))))....(((......)))...((((.(((...((([[....(.((((((...........((..(.((((((.........(..((.(((..(((.........)))..))).........((......))...))...)....)))))).).))...........]]......))))))))))...)))))))....(((((((...)))))))........))))))(.(((.(.(.(........(((..((....))..))).....).).).)))..).....))))))(......((.....((((((.......)))))).(((....((((..((...((((((...((.....)).))))))....[[(.((.((...((....(((....)))....))...))....((((........)))).]](.(((((((...((.....((....(((((.(((..(((((..(((.((...{{....)))))...(((((.(.(..(...(((((.............)))))......).)...)))))).....(((((....)))))....)))))...)))..))))).........)).....))......))))))).))).)..)).....((......)).)))).((((......))))..)))...((((....(((((((..((.......(........((((....(....).....)))).((((((((...))))))))(...).......((((((.((...(...........)...(((((((.....(((.....))).......)))))))..((((.(((..((.((((..((.....(...(((((------..((....))...)))))...).....))))))...)))))(.(((.........))).)........(............((((.......))))......)....))))...))..)))))).)...))..))))))).)))))).....).....((((..........))))..((((((((..(..........((((.((((((..(((((.(.(.((((..((((((((((..((((.(......[..(((((..(((......(((((((....)))))))...)))..........].)))))).))))..))))))))))...(((((((......))))))).....)))).).)..)))))..(((.......)))((((((...........)))))).[((....((((((...(((((.........))))).....((][.[[[))....))))))....((((..(((...{..)))..)))).(((....))).))]]].].....((((.(..((..]]]]..)).).))))......}......))))..))))))......((((..(.((((((....(.......)....))))))...).)).).)......((((.((((((..((((((.(........).)))..))).(((((.....))))).....)))))..)...))).).....(((((.(....).).)))).........).))))))))[....((((((...((((..(((((((...............))))))).(((((...(.((...(((((((((((.}}.))))))...)))))...)).).)))))....((.(..((.(.............).))...)))..))))..]....))))))....((..)).....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))....)))))))).

>strand_9
CCCCCGUGCCCAUAGCACUGUGGAACCACCCCACCCCAUGCCGAACUGGGUCGUGAAACACAGCAGCGCCAAUGAUACUCGGACCGCAGGGUCCCGGAAAAGUCGGUCAGCGCGGGGG
(((((((((.....((.(((((.....(((((...............)))..))....)))))..)).((.......((.(((((....))))).)).......))...)))))))))