Any published work which has made use of RNA FRABASE should cite at least
one of the following papers:
M. Popenda, M. Blazewicz, M. Szachniuk, R.W. Adamiak.
RNA FRABASE version 1.0: an engine with a database to search for the
three-dimensional fragments within RNA structures.
Nucleic Acids Research 36, 2008,
D386-D391 (published online on October 5, 2007,
This paper refers to the following issues:
- what is RNA FRABASE?
- the general idea of RNA FRABASE construction and usage
- an introduction to the RNA fragments database architecture and
search engine functionality
M. Popenda, M. Szachniuk, M. Blazewicz, S. Wasik, E.K. Burke, J.
Blazewicz, R.W. Adamiak.
RNA FRABASE 2.0: an advanced web-accessible database with the capacity
to search the three-dimensional fragments within RNA structures.
BMC Bioinformatics, 2010,
11:231 (published online on May 6, 2010,
This paper presents:
- the contents of database in 2.0 version
- a description of advanced search options including functions to
find predefined motifs
M. Popenda, L. Bielecki, R.W. Adamiak.
High-throughput method for the prediction of low-resolution,
three-dimensional RNA structures.
Nucleic Acids Symposium Series 50, 2006, 67-68