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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3KNJ
NA0389
A, V, W, X, Y
1
RIBOSOME/ANTIBIOTIC
X-Ray Difraction
3.15
2009-11-12
model 1
>strand_A
UUUGUuGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGA
-----....((((..[.[[[..))))..(((.(.(((..((((.((((....(((.(((..(((..((..(((((..---------..)))))..)))))......(((......((((((((..((...((.((((.((.(.....(((((......)))))......).)).....(...((((......))))...)....(..(...)..).)))).))..)))))))))).(.....(....(.(.((((.......)))).).)..).......)...((((((((....))))...))))))).((.((............)).)).(((.(...))))...)))))).).....(.(((...(((((....)))).))))).)).).))))...(((......((((....)))).....)))......(((....(.....(.(.....).)......).....))).......(((...[......((......((..].))........))....)))..))).))))...............[...(.((((...(((.(..(((..(...((((((.......(((((.....))))).....)))))).....).)))..)..(((.(((((...(((((.(......(((((....((........)).......))))).............((....)).).)))))..)))))..))..))))...))))....(((((....(.....((...........)).....).)))))......{....((((...((((((.(.(...).).))))))....(..].).......)))).)....(((.......(((....))).....)))...]]].](((((.((((((...(..((.....(((((((((.......((........))...........(((..(........((........(((.(....).))).......................))........((....(((.(......(((((((.(....).)...(((......)))...)))))).......((.((.(..............................).))...........................)).........)..))...)..)).......)..))).....).)))))))).....(..(..(.......(......((........))........).......)..)..)...........(((.((..........)).))).............)).....(((..((..........))..)))......).....))))))))).))..(.(..((...((((.(((..(((.((((..(((...(..(((.....((....))..)))..)..)))..)))).)))..))).))))....))...)..)....(((((((....)))))))..}..
>strand_V
AAAAAGGAAAUAaAAAUGCAGUUCAAUCUA
------------...[.[.[[.--------
>strand_W
UGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
((((((.....(.....{...)...((.(...]]....).))......(.((..}....)).)..))))))....
>strand_X
cGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.(((((...((((.........)))).(((.(..].]..).))).....((.(.........).)).))))).....
>strand_Y
uGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUGUGAUUCCGGCUUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
((((.(....(...........).....(.........)..........................).))))....
