RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
3J12		A, B	1	RIBOSOME	Electron Microscopy	11.5	2011-12-09

model 1

>strand_A
uGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU
(((((..(((.....((((((((....(((((((.............))))..)))...)))))).)).((.......(((((((.....))))))).......))...)))..))))).

>strand_B
gGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUguuGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGuGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACaGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUgCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGuAACuAuAACGGUCCUAAGGUAGCGAAAuUCCUUGUCGGGUAAGUUCCGACcUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGaAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUgAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGgGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGgGGAuAACAGGCuGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCAcCUCGauGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCuGUUCGCCAUUUAAAGUGGUACGcGAGCuGGGUUUAGAACGUCGUGAGACAGUuCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU
((((.(.(......(.(((((((......(((..(((((.(((((((......((.(((.[..[[[.))).....(((((....(((]]]..].)))........)))))....))....(((....)))(.(((((....))))).).(..((((((.........))))))..).)).....(((..........[..........)))............((....))...(((((.....(..]....)....)))))...((((.((((......((.((((.(((((.(((.....(((......)))..[[(...).(((.....]])))...)))...))))).)))).))...))))...)....(((((((...........)))))))......((((...[[[[.))))..)))......)).))).))).))...............((....))....))......(..((((.....))))............))......))))))).).....(.((((..(((((......)))))..)))).[.(............)..(((((....(((...((....(..(((...((.....))...)))...((....))..((((.....)))).....)....))...)))..(..(...((((((.....(((.((.(((.(((....(((((........))))).....)))...(((.(((((........))))))))..).)).)).)))...(((.....)))......))))))......)..)..((((((....(((((....)))))..((((((.(..((.((((((.....(((...(((.(.((...(((..(.......)..).))...)).).)))..)).).....))))))..))...))))))).....((.((((((........)))))).))....(((......)))...((.(.(((...(..[[[...(.((((.(.....(.....(...(((((..(((.......((..(.(((..(((.........)))..)))........(((......)))..)..))...)))..)))))..)...........]]].)...).)))))..)...)))).)).((.(((((....))))).)).....))))))((.((((....((......((((((((....))))))))...))...))))..)).....))))).(......((.....((((((.......))))))(.((....((((..((..(((((((....(.....)..))))))....(([.[..((...(((...(((....)))...)))...))...(((((........)))))))(((.(((((((((...((((.....((...(((..(((((((((((....{{{...))))))((..((.(...(((..(((((((.((.....)))))))))....)))..{).))...))(..(((((....)))))...))))))...)))....)).(..).....))))...))....))))))).))).].].))).....((......)).))))..(((.....)))...)).)..(((.....((((((((.((..(....(.......(((((....(.[..).....)))))((((((.....(((....((((..)})))....)))...))))))(...).......(((((((((...((.........))...(((((((.....(((....))).......))))))).].(((.(((...((((((....(.....(..((.((..((....))...)).))...)....)..)))))..).)))(..((.........))..)........((..........((((((.....))))))..)..)....)))....)).))))))).)..))).))))))))..))))).....))....(((((.....]..)))))..((((.(((..((..........(((.(.(.((..(((((.(((.(((((.(((.(((((((.((.(.(.........(...(...........(.....(......).....)..................)..).).).)).))))))).)))...(((.(((.((.....)).))))))....))))).)))..)))))..(........[..)(((((...........].)))))(......((((((..(.((((.(.......).))))...).((.[.[[[)).....))))))....(((..((.(..{.).))..)))...((....))....]]].].....(((((((.((..]]]]..))))))))).....)}......)).)...))))........(((..(.(((.((...(.........)...)).)))...).)).).......((.((.(((.((.....((.(((......))).))......(((((.....))))).....)).))..)...))..))....(.(((((....))).)).)........)).))).))))[...((.((.(...((((..(((((((.....(....)....))))))).(..((...((((...((((((((((.}}}..)))))..)))))...)))).))..)...(((....((((.............))))....))).))))..]....).)).))(.((((((...))))))(....(.....((.........))......((((((((..((....(((((....)))))...))...))))).)))......)..).)).).))))..