RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
3J11		A, B	1	RIBOSOME	Electron Microscopy	13.1	2011-12-09

model 1

>strand_A
uGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU
(((((.((((......(((((((....(((((((...(.....)...))))..)))...)))))).)..((.......(((((((.....))))))).......))...)))).))))).

>strand_B
gGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUguuGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGuGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACaGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUgCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGuAACuAuAACGGUCCUAAGGUAGCGAAAuUCCUUGUCGGGUAAGUUCCGACcUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGaAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUgAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGgGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGgGGAuAACAGGCuGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCAcCUCGauGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCuGUUCGCCAUUUAAAGUGGUACGcGAGCuGGGUUUAGAACGUCGUGAGACAGUuCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU
((((.(((......(.(((.((((.....(((..(((.((((((.((......((.(.(....[[[.).).....(((((....(((]]]....)))........)))))....))....(((....)))(.(((((....))))).).(..((((((.........))))))..).)).....((((.........[.........))))............((....))...(((((.....((.]...))....)))))...((((.((((......((.((((((((((.(((....(((........))).[[(...).(((.....]])))...)))...)))))))))).))...))))...)....(((((((...[.......)))))))......(((((].[[[[)))))..))).......).))))).).))...............((....))....))......(...(((.....))).............)).....)))).))).).....(.((((..(((((......)))))..)))).[...(........)....(((((....(((..(((.((((..(((...((.....))...)))...((....))..((.........)).....)))).)))..)))..((.....((((((.....((((((.(((.(((....((((((......)))))).....)))...(((.((((..........)))))))..).)).)))))).(.(((.....)))...)..))))))........))..((((((....(((((....)))))..((((((.(..((.((((.(.....(((...(((.(((.....((..(.......)..).).....))).)))..)).).....).))))..))...))))))).....((.((((((........)))))).))....(((......)))...((...(((...(.([[[...(.((((((...........((..(((((..(((.....{.(.(((...(..(((.........)))..).......(..(((......)))).))).)...)))..))))).))...........]]].....)))))))).)...)))..)).((.(((((....))))).)).....))))))((.((((....((......((((((((....))))))))...))...))))..)).....))))).(......((.....((((((.......))))))(.((....(((...((..(.(((((....(.....)..))))).....[[(((..((...(((...(((....)))...)))...))...(.(((........))).)]](((.(((((((((...((((.....((...(((..(((((((.(((....{{{...))).))((..((((...((((((((((((.((.....))))))))))..))))..[))))...))(..((((......))))...))))))...)))....))..........))))...))....))))))).))).))).))).....((......))..)))..(((.....)))...)).)..(((.....(.((((((.((..(....(.......(((((....(.{..).....)))))((((((.....(((...(.(((..)])).)...)))...))))))(...).......(((((((((...((.........))...(((((((.....(((....))).......))))))).}.(((.(((..(((((((....(.....(..(((((..((....))...)))))...)....)..)))))..)))))(.(((.........))).)........((..........((((((.....))))))..)..)....)))....)).))))))).)..))).)))))).)..))))).....)).{..(((((.....]}.)))))..((((((((...(.(.......((((.(.(..(..(((((.(((.(((((.(((.(((.(((.((.(.(......[..(...(...........(...(((......)))...)................].)..).).).)).))).))).)))...(((.(((.((.....)).))))))....))))).)))..)))))..(.(......[).)(((((...........].)))))([.(...((((((..(.((((...........))))...)..(][.[[[)......))))))...((((..((.(..{.).))..))))..((....))..).]]].].....(((((((.((..]]]]..))))))))).....)}......)..)...))))).......(((..(.((((((...(.........)...))))))...).)).).......((.(..(((.(......((.(((......))).))......(((((.....)))))......).))..)....)..))....(.((.((....))..)).).....)..)..))))))))[...(((((.(...((((..(((((((.....(....)....))))))).(..((...((((...(((((((((((}}}.))))))..)))))...)))).))..)...(((....((((.....}.......))))....))).))))..]....).)))))(.((((((...))))))(....((..(..((.......))..)....((((((((..((....((.((....)).))...))...))))).))).....))..).)))).))))..