RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
2GYC		0, 9	1	RIBOSOME	Electron Microscopy	15	2006-05-09

model 1

>strand_0
cGUACACGGUGGAUGCCCUGGCAGUCAAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUUAACCGGCGAUUUCCGAAUGGGGAACCCCGAUCAUUAUCCAAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCGAGCCUAAUCAGUGUGUGUGUUGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAUGCACAUGCUGUAGCUCGAUGAGUAGGGCGGGCCGUGGUACCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGGCACCUUAUGCGUGUUAUGGCGUGCCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGGGGAGCCGAAGGGAAACCGAGUCUUAACGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCGACUUCCAACCCGAUGCAAACUGCGAAUACCGGAGAUGUUAUCACGGGAGACACACGGCGGGUGUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUGUGGGUGAUGGAGGGACGGAGAAGGCUAUGUUAUGCCAAGCUAUGGCUGCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCUACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUAACAAAGCCCUCUUCCAGGAAAAGCUUCUAAACGUUGAAACAUGUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUUAGCUCGCCUGAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUGGGGUUGCAAAGCUCUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGGCCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACCCGAAUCCGGGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGCAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUCUGAAUGGAAGGGCCAUCGUCAACGGAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAGCCAUGGCACUGCCCGGUAGCUAAAUGCGGAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCAAUGCGUUGAGCUAACCGGUACUAAUGAACCGAGGUCUUGACCA
.((((((((.....(((..((((((((.............(.(.[....[.).)......(((((...(((]....].)))......))))).......................(((((.....)))))......((((((.....(...[..)......))))).).........((....))....(((......((.]...)).....)))....(((.(((......((.((......(........((((......))))..[......(((.....].)))......).......)).))...)))........(((((((........))))))).......((((......))))...))).........)))))).))...............((....))....)).........(...........).............).....))))))))..........(......(((.......))).....)......(........)...((((((.......(((..........((..........))..............((((....))))............)))......(.(....(((((......((((((((..((.(...((((((......))))))...)..))....((..(((..........))).)).....)))))))).....((.....)).......))))).......).)...((((((.....((((....))))....((..........(..(..(...............((...((..(.....).))...))...............)..)...)...........)).....(.(.(((.([......).))).).).....((......)).....(((((....((([[....(.((.........(......(...(..(..(.........(((.(.((...(((.........)))...)).....(..(((......)))).).))).....)..)..)..)............]].).......))))))....)))))...(((.(.......).)))......))))))..(...(..(((......((((((((....))))))))...)))..)...)........))))))..............((((((.......)))))).(((....((((..((...((((((...((.....)).))))))....[.(((.(....(((.(..((....))..).)))....)....((((........))))..]((((..(((................(((...(...((.(...(((.(.........))))...(((((.(.......((((.................))))...........))))))........................).))...)...))).........................)))..)))).)))..)).....((......)).))))..(((.....)))..)))...(((...............(..(.............((((....(....).....)))).(((((((((.....)))))))))(...).......(.(((((((...((.........))...(((((.(.....(.(....).).......).)))))...(..............(..........((((......))))........)............(((((.......))))).....................(((((.......)))))............)....)).))))).)....))............)).)............(((((........)))))..(((((((...((.(............(..(..(.................(((...(((((.(..(.........................................................................).).)))))...)))...((((....)))).......................((.]....[))..(.(.(..........])..))...((...(((((((...(((.(....).))).....((...[[.))....)))))))...(((...((........))...)))..(......)..)).]]...........(.(((........))).)..............).)...)..............(....((((((...(.........)...)))))).....).............(....(........((((((......)))))).................................).....).......(..((((....))).)..).....)..))..)))))))...........((((..((((........(....).......))))....((...((((...(((((.((((....))))...)))))...)))).)).......(....(.((.............)).)....)...))))...................(...((((.......)))).....(((.((((..((....((..........))...))...))))..))).....)..............

>strand_9
gGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGAACUGCC
((.((.......(...........(.(.................)...)..........).............(((.(..(...)..).)))...........)).))